NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325405_1004549

Scaffold Ga0325405_1004549


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1004549 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14124
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001798Metagenome632Y
F005406Metagenome401Y
F091083Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0325405_10045491F001798N/AVDLVDSSTQALWLDEMTLIHSEFGNVFLMKVVGNHLIFLTIKFQSIWITRARDMAKILSSAVGGRGG
Ga0325405_10045492F005406GGAMDQVKSFTTLPNGKVIEKPVLEPCDKEDELVSEGKEKVKLEHCKEETDSPPALPFPYVMTKQKKVNHNSEIFETFK
Ga0325405_10045496F091083N/AMRQMKSIARHQQTVAASSSSSEKDIFLCADHDDASAPTCDAASFSTISQRRGSVPSQRGQFTRKYQA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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