NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0325405_1009062

Scaffold Ga0325405_1009062


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1009062 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9788
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026451Metagenome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0325405_100906213F026451N/ALKPFLRKAWRFLRILRWAGHLILRPFLRKAWSFLRILRWAGHPILRASLRKAWSFLKNFERSWLPDIETVS
Ga0325405_10090622F026451N/ALKPFLRKAWSFLRILTWTGHLILRPFLRKAWSFLRILRWAGHPILRAFLRKAWSFLKNFERGRLPGIETVF
Ga0325405_10090624F026451N/ALKPFLRKAWRFLRILRWAGHLILRPFLRKAWSFLRILRWAGHLILRAFLRKALSFLKNFKRGRLPDIETVS
Ga0325405_10090625F026451N/ALKPFLRKAWRFLRILRWTGHLILRPFLRKAWRFLRILRWAGHPILRAFLRKAWSFLKNFERGRLPDIETVS
Ga0325405_10090626F026451N/ALKPFLRKAWRFLRILRWAGHLILRPFLRKAWSFLRILRWAGHSILRACLRKAWSFLKNFERSWLPDIETVS
Ga0325405_10090628F026451N/ALKPFLRKAWRFLRILRWAGHLILRPFLRKAWSFLRILRWAGHPILRACLRKAWSFLKNFERGRLPDIETVS
Ga0325405_10090629F026451N/ALKPFLRKAWSFLRILTWTGHLILRPFLRKAWSFLRILRWAGHPILRAFLRKAWSFLKNFERGRLLDIETVS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.