NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325405_1009310

Scaffold Ga0325405_1009310


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1009310 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9630
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005406Metagenome401Y
F006830Metagenome363Y
F030302Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0325405_100931014F005406GGAMDQVKSVITFCSGKVIENPFLEPCEKDDELISEGKEGVESEHCKEKTDSPLTLPFPHAMTKQRKVNHNSEIFETIKQVMINIPLLDVIK
Ga0325405_10093103F030302N/AMPGIGKSTFAKKHRAKRLKVCHRCAKWTCNAQCCSLEMISINREDKIQFIKDDLSKGSLDNLLLTLETHPSGDVHRAIHDLWPQFYKEHARYSLGNLTKKDPAYQFLRKLDGKPIPDL
Ga0325405_10093104F006830N/AMDTILEKFKKYFPALPPNAIAKIYRARCARLRLLMNHGIPEDIRWLIEAKV
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