NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325405_1029073

Scaffold Ga0325405_1029073


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1029073 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4355
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008669Metagenome329Y

Sequences

Protein IDFamilyRBSSequence
Ga0325405_10290732F008669GGAGMPFYMEWMRNRYSMMMRSGRNRLDGRFERVIIFDPTVGARSNVYWSFRMPFSIEWMRNRYSMMMRSGRARLDGRFERAITFDPSVG
Ga0325405_10290733F008669GAGMPFSMEWMRNRCSMMMRSGRHRLGGRFERVITFDPTVGSRSNVYWSFRMPFSMLWMRNRFSVMMTCGRTKIE
Ga0325405_10290735F008669GAGMPFSMEWMRNRYSMMMRSGRNRLHGRFERVITFDSTVGSRSNVYWSFRIPFSMLWMRNRFSVMMTCGRTRLE
Ga0325405_10290736F008669GAGMSFFMEWMRNRYLMMMRSGRNRLYGRFQRVITFDPTMGSRSNVYWSFRILFSMLWMRNRFSVMMTCGRTRLE
Ga0325405_10290738F008669GAGMPFSMEWMRNRYSMMMRSGRNRLHGRFERVITFDPTVGSRSNVYWSFRMPFSMLWMRNQFSVMMTCGRTRLE
Ga0325405_10290739F008669N/AVIKLLLEFAVPFSMQWMRNRYSVMMRSGRARLDGRFETAITFDPTVGSRSNFYWSFRMPFSMEWMRNRYSVMMRFARGRLDGRFERAITFDATVGS
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