NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325405_1051835

Scaffold Ga0325405_1051835


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1051835 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2415
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008225Metagenome336Y
F010037Metagenome309Y
F012319Metagenome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0325405_10518351F008225N/AGSCHDFWDGSESVFVNDFXFCRSLCAMKISASAAELCSGEDFWVCSESVFVNDFXFCSSLCAMNISASAVKLCSGEDWWVCCESVFVNDFXFCSSLXGLKISASAVEPGSCHDFWDGSESVFVNDFXFYSSLCAMKISASATEVYSGEELWVCSELVFVNDFXFCRSLCAKKISASAVELCSGEYWWVCCESVFVNDF
Ga0325405_10518352F010037N/AMFVRLKLKSSGLIDYCRIINHXQKLISSRPTNPHQKTVLLQKLKSSWHKDYCKIRNHXXKLIHCRPINPHQNTVLRQKLKSSWHKDSCRIRNRXRKLIRCRPRNRDKNPVLRLKLKSXGLIDYCRIRNHXRKLIRSRPTNPHQNTVLRQKLKCSWHKDCCRIRNHXRKLIRCRPTNPHQNTVLRQKLKS
Ga0325405_10518353F012319GGAGLTKTDSQPTHQSSPEHSFTAEAEMFMAQRLLQNQKSLTKTDSLQTNKYSPEHTSAAEAEILMAQRLMQNQKSLTKTDSLQTQKS
Ga0325405_10518354F010037N/AMRNHXRKLIRRRPTNPHQNTDLRQKLKSSWHKDSCRIRNHXRKLICCRPTTPHQNTLLWQKLKSSWHKDCCRIRNHLRKLIRCRPXNRDKNPVLRLKLKSSGLIDYCRIRNHXRKLIRSGPTNPHQNTVLRQKLKCSWHKDYCRIRNHXRKLIRYRPTNTHQNTVLRQKLKS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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