NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325404_1042938

Scaffold Ga0325404_1042938


Overview

Basic Information
Taxon OID3300032390 Open in IMG/M
Scaffold IDGa0325404_1042938 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2944
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002704Metagenome535Y

Sequences

Protein IDFamilyRBSSequence
Ga0325404_104293810F002704GAGMDGSKGHNFPSDRWIAIKLLQEFPDALFHGVDEESILDDDEVWSSQAGWTVRKAITFNPTVGSRSNFFWSFRMNFSMEWMRNRYSMMMTCGRAKLDGRFERP
Ga0325404_10429383F002704GAGMDGSKGYNFPSDRWIAIKLLLEFPDELFHGVDEESILADDEVWSSQAGWTGRKAITFDATVGSRSNFYRSFRMHFSTQWMSNRYSVMMRSGPARLDGRFERP
Ga0325404_10429387F002704GAGMDGSKGHNFQSDRWIAIKLLLEFPDELFHGVDEESILADDEVWSSQAGWTGRKAITFDATVGSRSNFYRSFRMHFSTQWMSNRYSVMMRSGPARLDGRFERP
Ga0325404_10429389F002704GAGMDGSKGHNFRSDRWIGIKLLLEFPDALLHGVDEESILDDDEVWSSQAGWTVRKAITFNPTVGSRSNYYWSFRMHFSIERMRNRYSMMMRSGRARLDGRFEMP
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