NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315275_10023950

Scaffold Ga0315275_10023950


Overview

Basic Information
Taxon OID3300032401 Open in IMG/M
Scaffold IDGa0315275_10023950 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6307
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5111Long. (o)-110.3555Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000922Metagenome833Y
F010673Metagenome300Y
F074789Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0315275_1002395013F000922AGGMKPEQWTKAKSLYLAGKTWAAIASDLKLNQSTLLSKASREGLPAIRKEMRNTITSKENVSLESLSAIVRSKLAADAASTLERIDSYELDGIKDESTREQILGSVAKRSALVFGWSEQGESTSVSINLLGSMPDRFAEVVVSNPV
Ga0315275_100239506F010673N/AMNPKLIPILERIIARDVILQSFHADRLPQSALAYIRQNYRMDSFLSDEEQDLIETLAPFADNIADSFREDESSDASIYHLFDDGSLWLKTNAYSSIWTDARDFAVEIILPRMTLNRMEAQLLRAIEMDDAVESVRADFYSSFAETLNRDCGIAYCDAREHWNAYSRQLGDGAREEAELGGWRCGRAEGQSFAEIFKRETINA
Ga0315275_100239508F074789N/AMKTTIETFRALESDGQVRIRAFPETDSYFDVFGESDSDQERQEMIDLINRVGCWFVESYYFADSQWHHADCIGMCVYSNPLNPAENCYVEDLMRAAIDALEMQSTEGAMI
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