NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315275_10568935

Scaffold Ga0315275_10568935


Overview

Basic Information
Taxon OID3300032401 Open in IMG/M
Scaffold IDGa0315275_10568935 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1267
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5111Long. (o)-110.3555Alt. (m)Depth (m)100
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056700Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0315275_105689351F056700N/AIQFLDTALGADRRQLVKQYVESIDRSARVADRAWQAVQEMSQGFVYAYQTALERALSEGTNPRWKPVIPQLFARLLHYHGTDAKLRAFRHERWIPAKWSNLHQLYARALELDVARVPVALASAGPGAMQWSTEQEYIYALLIQQLNMGSLSPVETDWASAQMRAWGRKLKFEAIPRSPEGFFVDLASKRGLARRTGGEAGPTMHFLDTTPLADQLERAIHALRQADIGEPGAAAALSQQRIGVLEKVRPVVVPNLYGELRRAPRTPVTVAAKVRVGLARICTELTPKAVVESANDPDAGNEQIEVFAVADRPRSQRQVPDEQDSLSASIAPVSDPAWQIKDRSVAGLRISAAGGIGQSLVLGALVAVRQSDANDWVLGAVRRLNKVSNDEVEAGVSIIADRIVPITVHAKRATQDDLGMVVN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.