NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310812_10516525

Scaffold Ga0310812_10516525


Overview

Basic Information
Taxon OID3300032421 Open in IMG/M
Scaffold IDGa0310812_10516525 Open in IMG/M
Source Dataset NameSoil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)537
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019917Metagenome / Metatranscriptome227Y
F037158Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0310812_105165251F037158N/APTALPLAPAATELEFRGPFLGSGWSLNLKEDIDGQFSIVPTPNAVSRTFPVCSGAGPEQKTLLLGAIPRAEVGPRESAKKGEKRQ
Ga0310812_105165252F019917N/ATTSNGANERSENTSQLSAIYLRFSSATTGEELRQVRNILVSSPGRNPVRLLFDRDNGNSLQLDAGMEFRVDFTPDLAEKLSRWLVTGNISS

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