Basic Information | |
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Taxon OID | 3300032431 Open in IMG/M |
Scaffold ID | Ga0335395_10002119 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-02 (spades assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12292 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (61.54%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Fryxell | |||||||
Coordinates | Lat. (o) | -77.605 | Long. (o) | 163.163 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F083733 | Metagenome / Metatranscriptome | 112 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335395_100021197 | F083733 | N/A | LVGLFGGLSSGSFFVYLFAVVGLLLMIFVEIETITFDKNLGHMTIKRHKPLIAKTKLIKHLLQDISGVEIQEMSSSESNTYRVCLVLHSGKQRVPLTSSFSTGLGSKHKKAEVIATFLDIRNYGLDGFPTDNSNELKWETIEEEITHWETAIKSDSNDADAHLRLGLALILQDKTKNKEQAMGYLKQAETLFKAQGYDEEAMEAAKLYGVAYWGMLGK |
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