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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032435 Open in IMG/M |
| Scaffold ID | Ga0335398_10131095 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2418 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Bonney | |||||||
| Coordinates | Lat. (o) | -77.714 | Long. (o) | 162.445 | Alt. (m) | Depth (m) | 83 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006056 | Metagenome | 382 | N |
| F009733 | Metagenome | 313 | N |
| F061563 | Metagenome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335398_101310952 | F009733 | GGA | MSEIDQELHVDTVEAEPVKKKPTSSKHPKVADETERARAIVRAKIKG |
| Ga0335398_101310953 | F061563 | AGGTGG | MISTAQAVMSLRPGVEWSMSGDDVAGITWHTPDVESLTEAEVAKEVKRLEAVAVATEANRVAELNSARAFALSLGFTPAMLGVMYPQLTEGA |
| Ga0335398_101310955 | F006056 | N/A | MTLQITLNGSVIDLGLFDYSLAIAHGRSDVTANPTASNAQLVLRGDTGPLLDLADTVAISFDGVPRFTGAISDLNVSFISTTTPTAITTITAMGNLAKLGYTDVGVSGYSEQTARQRVETILDATNETFVNGGDPDITLYAILEADAQPTTALDALQQVAAWTGATFFDDPLGRIVFEDYGNRGQTTFAGIWSNQIGTWADAEGTWGSNPTTIGSLPLNAEGIIFAPTWAKTLTPLINDVTVVYGPDLSENQTDSASITQYGRREYRLDTQIKLEADAITRAASIITAQANGLWNLGQVSILMSELDADQTTQVLNLVSGSLVNVIGLPSSGPYSQFNGILEGWTDSYNNGQHILTLSISDPRFSYQMLEFGEVTDTLTWGDVGAEAQWYEIITNSDLIGA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |