NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214493_1059749

Scaffold Ga0214493_1059749


Overview

Basic Information
Taxon OID3300032465 Open in IMG/M
Scaffold IDGa0214493_1059749 Open in IMG/M
Source Dataset NameMetatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)904
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038019Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0214493_10597491F038019N/ALKDPVDTWLLTSITMPTSGTRLRSSCTAASVKPNTGSEAKTCRGCFRSACDTRETISNGLRLIRIRYRIPCSELPDLEPKELSMYLSYLLLQGKKRASVKFPRRQSLRRDSEGFFPLMRMLKHERWEFAHSVSSIKRSLPQGCRQHTPSARPAWELNAFSTPPPPSSEYLRFVRSEVSKLFPYEWDRRYADFVWRHVPNASARMNSPRADLHWCGNGKEFRRQCLVGRSVPVDQPVKARYKEVMSAGKCRPLVIFDESTEVLAPMHKCLDQHLMKMPWRLVGPPTEKRISSACVYPCQTS
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