Basic Information | |
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Taxon OID | 3300032476 Open in IMG/M |
Scaffold ID | Ga0352984_1146428 Open in IMG/M |
Source Dataset Name | Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-1 corn stover (Eukaryote Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 778 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Hymenoptera → Apocrita → Aculeata → Apoidea → Apidae → Apinae → Apini → Apis → Apis mellifera | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Illinois | |||||||
Coordinates | Lat. (o) | 40.102108 | Long. (o) | -88.227299 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F093017 | Metagenome / Metatranscriptome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0352984_11464281 | F093017 | N/A | AINCIHGLLASLGYYPSIEEINNIQREVRHMKHLENSKEKSDDITFETFVKIYLNHRPYIELDVDKIEGSFDNMKNQVKYHAILDDNETIIIRERLIECLQEIKYEDKKKDDKGVVTVELKRKVDDATIEAIIKELDENSNEQPITSLEHYQKKINRDKFLDLLKDYKIDDKDVNAMLEKLVGENSMNNLPSQLLYKMGDRLISRENFLHMLKENGEKLTDEEIGSILKVLVGDPEPSHLPPMLSFDYIFENILLMEKE |
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