NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314668_10222563

Scaffold Ga0314668_10222563


Overview

Basic Information
Taxon OID3300032481 Open in IMG/M
Scaffold IDGa0314668_10222563 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Amb1_26May_surf (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)966
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Seawater Microbial Communities From Espelandsvegen Fjord, Bergen, Norway

Source Dataset Sampling Location
Location NameNorway: Bergen
CoordinatesLat. (o)60.2696Long. (o)5.2187Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008884Metatranscriptome326Y
F098610Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0314668_102225631F098610GAGMFGYWPWIGLISIIVLLTAVMVIKWGDRLCQARLTPIDHSRLDQFGAQPEDFDMEMEDGNGTMVDFTLQEGSLHDSHGRDSRLTMDTSASGRREMAL
Ga0314668_102225632F008884N/AMGNRLSTWNLTIQSAVDGENFDYNKDYNQAPYIFADYTWFYIGIGATAGAALLLILANVCLGCKYKKYWYSRYSGNRYVLPIFVLPPKDQSPLDI

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