NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348332_13538438

Scaffold Ga0348332_13538438


Overview

Basic Information
Taxon OID3300032515 Open in IMG/M
Scaffold IDGa0348332_13538438 Open in IMG/M
Source Dataset NameFICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1403
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0431Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038768Metagenome / Metatranscriptome165N
F055038Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0348332_135384381F038768AGGAGMIGLFLYLALGVGLLVFLWALARRQGAPVEGCGLQFVEARQALRTLQFGLLPENLIARIFDPEDFRYVTAASPEEIGKLFLEERSRISLMWVRRVRSEIRNLMHFHLAYSRLHAKLSLLTEIRLALDFALLLLVCRALRILLYLRGPYGARSVVRVLTATAGRVCAASEKSLAFLNPPALESFRRDSAGHGAAI
Ga0348332_135384382F055038N/ALSMLLWLAGLFFEFLLLVRCVQTKTLTKYIYFYTYIFCVFAVSAGLYIGHTISPAFYDAWYWPTQFATLGIGFGVVLEIVRQALPAYPGAERIARLASCAVFIATFCYVEWHVASRAQWTTANATVELERDLRVIEALVLATVLAIVFHYRIELGKNATGMILGFGAYVGVSLTTLALRAFVGSRFDTAWGLLQSASFVFATAVWTVALWSDSPNPKPPDVGSGYDALVHDTRERLDSLRSQLRGVAR
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