Basic Information | |
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Taxon OID | 3300032515 Open in IMG/M |
Scaffold ID | Ga0348332_14263250 Open in IMG/M |
Source Dataset Name | FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 539 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
Source Dataset Sampling Location | ||||||||
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Location Name | Czech Republic: South Bohemian Region | |||||||
Coordinates | Lat. (o) | 49.0431 | Long. (o) | 13.617 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006231 | Metagenome / Metatranscriptome | 378 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0348332_142632501 | F006231 | GGAGG | MDLRWRHFPLVFALAATVVMPALAEGAGPAYGGSEGGESIPDLSGLWLHPLPGFEPLLSGPTALVNRSRRPNGTGDILKLNGDYTNPILKPEAVEVVKRHAELGLNGVGDPNPRNQCWPAGVPFVLTNGPTQLLQEPDKVTILYSYDHQVRRVRLNQAHPA |
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