NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315273_10062807

Scaffold Ga0315273_10062807


Overview

Basic Information
Taxon OID3300032516 Open in IMG/M
Scaffold IDGa0315273_10062807 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5037
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5119Long. (o)-110.3577Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002333Metagenome569Y

Sequences

Protein IDFamilyRBSSequence
Ga0315273_100628076F002333N/AMTTQLTTLNAAQACIYTRSNLSRAFQEFDDTGIVDINLRDDTCIVVRTDGSEQSYPRETIKTAYQSYTNRLKDFFAYLGPNYRGPSIWHQNAYIMFKGWNYTHSLGHLTSNAKLQAHWIDKFIHLSDPQKVTTLLQSDQTDLGHLVAPDGLRLPAGAIDFNIDSEQESDTGSPAAEPYCSCGSFQRQLANLSDFQMEIKGYKPGCIHLTWFYKYRELLCHRTDVRNKFPGGSPDTCVAWWYAPPSDHISDGRFVLLHTKSGAQAPLSHWRTYKPKEIFTQHDAWDLFSNMMDAGYAPFPGTSLPQLASAVKKNGN
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Institute for Fundamental Biomedical Research
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