NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315273_10137295

Scaffold Ga0315273_10137295


Overview

Basic Information
Taxon OID3300032516 Open in IMG/M
Scaffold IDGa0315273_10137295 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3352
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5119Long. (o)-110.3577Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004838Metagenome / Metatranscriptome421Y
F043770Metagenome155N

Sequences

Protein IDFamilyRBSSequence
Ga0315273_101372951F043770GAGGMDLQKRIDQLREQGFNNFALQDRPGPKPTKANCGRFYPLNKEKRGWANNGDEVSRDLVNYVNKFPGLYTLHYSRALLTSGTESFEIDTRPADEQTPQTFNLADMDERNKDEKRSDELYIREILSKNGFLESEVARLKDKIEELE
Ga0315273_101372955F004838N/AMITAQDKILYVANKLGLTSLKDMQASTGAVYDVDTDLSGQIFSAATRHQFPSVTNLTDNQFEVNEALLVENITFFCRDEAGLITNFQNLYNSNAVILFDLVIGNKRVMKDTPVFAAGSPYTFANVGQQGSLDAGNVVSKYLPRNQVYMEGAGVLIPPQVQWYVQYTIYNVVTGAIIAPTAGKALGCYLFGTKVLLNFNTSI
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