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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032516 Open in IMG/M |
| Scaffold ID | Ga0315273_10279925 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2268 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5119 | Long. (o) | -110.3577 | Alt. (m) | Depth (m) | 80 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007030 | Metagenome / Metatranscriptome | 359 | Y |
| F010991 | Metagenome / Metatranscriptome | 296 | Y |
| F091372 | Metagenome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315273_102799252 | F091372 | N/A | MKPYDLFRTKLLNEAPRLIQWAIAKGLMSYPITTKYHEDGSINPDIEEEIHVNPDQYTPEFCMRAHELRQLGLTLDDTAKVIGVSRGSITYILAKGHEHQLEKERANLK |
| Ga0315273_102799253 | F007030 | GAG | MKPDIFTHAPLDKIVVNEPTTSGTRPSIHVSLYAYGGISAACMMSWVGLTATFSVGDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWVQIDHDIEFDPADIIRLAELAHQHQATVCIPYPCRTIPPRPALRPKADHLQALKFQLANAEAAPELVPITMFASGCLAIPRRCLMSALDMLGGSEVPNPYRIDWCKDVRVDQFPTLWMPFAMDTQPGQLEYLSEDYAAAVRLSLAGVEHYSMLPKKPINHWGEYPFSFKPYAG |
| Ga0315273_102799254 | F010991 | N/A | MQGKKDKKPSLNDVALKAGTDRNRVAAALRDDPDLPKAFKDKVKKAVEAVGYVKPPPNQHPNSKLDQEKADAIVEGIVQNKSITTIANEVGLDTETASKYIRGVKVPKDYPDNEEDWRKDVTGFLEVAIWKGTKRLAENSMHFIDDRSLPVAVAVLVDKLAATKGQPTSIHLNMTASVSHRDLMADLKDRDVTPVNDEQTHDLV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |