NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315273_10981361

Scaffold Ga0315273_10981361


Overview

Basic Information
Taxon OID3300032516 Open in IMG/M
Scaffold IDGa0315273_10981361 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1083
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5119Long. (o)-110.3577Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003784Metagenome468Y
F064505Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0315273_109813611F064505N/AVTELHPVIYDLVPSVANTIYRRYKTHVEKDDIKQELMAWAMTRAADHTEDLMEPIEERRRHNEQRIAWQMKRAGERYARKEKAAKSGYQTNDEAYYETPKLGMLLPFVIASIIDGTV
Ga0315273_109813612F003784GGAMYDDDRKRVGHNATDFAAYGLSHLAAGQSDTTHTHTATTNPLADHAAVIGYRAIGVSTEDLTSFIESFASLRANRVKSVGHSQYAIAQGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCD
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Institute for Fundamental Biomedical Research
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