NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315273_11717477

Scaffold Ga0315273_11717477


Overview

Basic Information
Taxon OID3300032516 Open in IMG/M
Scaffold IDGa0315273_11717477 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)760
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5119Long. (o)-110.3577Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016936Metagenome / Metatranscriptome243Y
F029363Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0315273_117174771F016936GGAGGMTLDLIHAELVRIREALEARPFASGAPAAKPATPRSEEVPMPTEIIDDAGNVQVHFGKNKGVALSSLSERSVAWYAQEAEPRIGNNGKPFPPRPEDVLLRNAARTLIHQKRGTLPSAAVPTAPVATSVNEEHVPF
Ga0315273_117174772F029363N/AMENDDDNEMLWAAQDLRTMTSCKAEITISRRVTIKPNAIKEGWDYQITFGDILNRGAWRWECAQAETLEAAMDITRAQITAQGDEKARELLQLQDAAAKLGLKLVEAAA
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