NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315273_11864332

Scaffold Ga0315273_11864332


Overview

Basic Information
Taxon OID3300032516 Open in IMG/M
Scaffold IDGa0315273_11864332 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)720
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5119Long. (o)-110.3577Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010386Metagenome / Metatranscriptome304Y
F033723Metagenome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0315273_118643321F010386N/ADSTHRSQYLALNGYTDVSANQALSNGISIITRAGDVRNSVTLKYGSSSANETAAFEDATSISNYGRLAQIITTTLLNSGDANTQAAFYLTLRAYPQPMFNQITFELTNPEIDNADRDALINVFMGLPLRISDLPQNMSSGQYLGFVEGWTFNAAYNSVSVTALLSPLAFSLQAMQWQDVSVLETWNTIVPTLDWANALVVA
Ga0315273_118643322F033723AGGAGMANPTTNYGWVMPTSTSLVTNLPADFNVFGQAVDT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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