NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0314689_10052800

Scaffold Ga0314689_10052800


Overview

Basic Information
Taxon OID3300032518 Open in IMG/M
Scaffold IDGa0314689_10052800 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red4_26May_deep (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1729
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Seawater Microbial Communities From Espelandsvegen Fjord, Bergen, Norway

Source Dataset Sampling Location
Location NameNorway: Bergen
CoordinatesLat. (o)60.2696Long. (o)5.2187Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102313Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0314689_100528002F102313AGGMFYNAEEYIEKLDNSFTHDHEIAALMGASPDSDGGPGHSDGMNKIELGDDRRSKKTGRLFPTSNKPNPMPKDLAFMFTKISPENGMYMWNFLTGIWVTQWVMVITYAAMLKYIGVDHWTPVTLCFGVPFAWLAIQHIYVDHDVMHGVTFPPYWWQKYITHPFSDFISIPWEEFILEHMKHHSSTVDLLTQGEFGWDPEMPLYWMMENKYWYLTVWFIPLIHWLGLNDTGGLFCLEWYSHFPEEGAGGKCNKEFWSKWLPRRMKHHGFVLAGWAMVYLLGEAATGHGLKFMLCVSCAARCGYGSAWLFITSFTHSHPWNKFLENDPHRSWPILHTIMAYVLGGRHRWNEMLFHDVHHAFPNAVGTLSQRGRFNKWNVVHDAAAKILERGLFKPNGDADTIMQKQQRKRSMLIMTRIDSTKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.