Scaffold Ga0314680_10583296

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0314680_10583296

Scaffold Ga0314680_10583296

Overview

Basic Information
Taxon OID	3300032521 Open in IMG/M
Scaffold ID	Ga0314680_10583296 Open in IMG/M
Source Dataset Name	Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red3_22May_deep (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	706
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Seawater Microbial Communities From Espelandsvegen Fjord, Bergen, Norway

Source Dataset Sampling Location
Location Name	Norway: Bergen
Coordinates	Lat. (^o)	60.2696	Long. (^o)	5.2187	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024727	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314680_105832961	F024727	N/A	MATEDAVIGWYDLAWKGGSFQVCFRPCGNFFCPKFQAQARWEIEGDTINVDWGKFGKYEFTFSSETKTMEGNAIPKNAEDDRNWRKATFKGPLSAAELALIGDGAGSEWDFEWSGGVFPVQFKADGYNHFKCNDFPAHAHWALEDAKLRIHWGEYGQYDLVVDGEAKTMEGGMVDGNPETDWRKAKWLRNLIDNKTIEKCEHHH

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.