Basic Information | |
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Taxon OID | 3300032560 Open in IMG/M |
Scaffold ID | Ga0316223_1053007 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18009 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1586 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.0411 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F029343 | Metagenome | 188 | Y |
F091426 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0316223_10530073 | F029343 | N/A | MEDAIESFETETKTGPRTITSYEFARWAALIEAVDIIAEKCEDRGIDFNSNAGMKYIKPLDIQDYVDNRTDTLLMKIKTARGIEKTLNNIKCLQIENKLRQLDINE |
Ga0316223_10530075 | F091426 | N/A | EYYTGVQSSQRTPETMSAYEYSSDNAPTLDKIANLKNNGNGNINPEALPYPLQDAVLQLANLYLQSLDLKNKAATATTMPLYKGKEKDLKKFRAKLAGIMVACKELASELNKFTLAPK |
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