NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316223_1053007

Scaffold Ga0316223_1053007


Overview

Basic Information
Taxon OID3300032560 Open in IMG/M
Scaffold IDGa0316223_1053007 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18009
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1586
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029343Metagenome188Y
F091426Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0316223_10530073F029343N/AMEDAIESFETETKTGPRTITSYEFARWAALIEAVDIIAEKCEDRGIDFNSNAGMKYIKPLDIQDYVDNRTDTLLMKIKTARGIEKTLNNIKCLQIENKLRQLDINE
Ga0316223_10530075F091426N/AEYYTGVQSSQRTPETMSAYEYSSDNAPTLDKIANLKNNGNGNINPEALPYPLQDAVLQLANLYLQSLDLKNKAATATTMPLYKGKEKDLKKFRAKLAGIMVACKELASELNKFTLAPK
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