NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316223_1118441

Scaffold Ga0316223_1118441


Overview

Basic Information
Taxon OID3300032560 Open in IMG/M
Scaffold IDGa0316223_1118441 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18009
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)915
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012939Metagenome275N
F033672Metagenome176N

Sequences

Protein IDFamilyRBSSequence
Ga0316223_11184411F033672N/AYSGTFDEYAKQLLRQNQNLPCAHCGSSLGHYATCPLISRDAAELASIQPIAERTIAVPEFSTEDTLRLRAWGVKA
Ga0316223_11184413F012939GAGGMKAATQSGQAITEGSMTILERIESVVGTLQRYDGRYCMWATTGTYDVRDILYKLRGVSLADAMESLCEATEEQHKRIKAERIAARERETI

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