NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0352978_1040458

Scaffold Ga0352978_1040458


Overview

Basic Information
Taxon OID3300032576 Open in IMG/M
Scaffold IDGa0352978_1040458 Open in IMG/M
Source Dataset NameMetatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-2 corn stover (Eukaryote Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)651
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Mucoromycotina → Endogonomycetes → Endogonales → Endogonaceae → Jimgerdemannia → Jimgerdemannia flammicorona(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location
Location NameUSA: Illinois
CoordinatesLat. (o)40.102108Long. (o)-88.227299Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084986Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0352978_10404581F084986N/AVADKLACTKADLTDGDTSAVIIVARSLNHLTVTDIDSNVVDARSGRTEEDKITSRFVAQRLLVAAIIILALCIVDDGLASALVDRVLGKTTAVKANDITIIAIGRDVLLDTISGSVIISTTPAVRILVDHTLGSRGDLVTTISLSAHSKSDQSNNKKETHFFLKQT
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