NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0352986_1034988

Scaffold Ga0352986_1034988


Overview

Basic Information
Taxon OID3300032597 Open in IMG/M
Scaffold IDGa0352986_1034988 Open in IMG/M
Source Dataset NameMetatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-1 switchgrass (Eukaryote Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)917
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location
Location NameUSA: Illinois
CoordinatesLat. (o)40.102108Long. (o)-88.227299Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076727Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0352986_10349881F076727N/ALKEQAKGLKNTIYKMLNILAKEDDNKPKISDELMENLIPVVDEKGYNEEGKDVVKLLDSLVLNKKCVPPFVQYKGIDSCVNLFDKNDSNIELIPILLSLFKSVADTSDEYKKMLKEKKLIDLINRAIKKIGMYDKKIEFDGRQLIFSINLAKIDLEDPNSIGVEDIKIVEPIPAEVRNFLTSGRQVKIINDHGDVKQMQLIFSSDLMKVSARKVKSTLPPKPKYIIETHTIKKILKGHGTNAFKKSKGLFRKIPPPEVCFSIIGPTTVDGVKALNVECESEKDVDKWLKYLSVVINYFKKTHTIK
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