Basic Information | |
---|---|
Taxon OID | 3300032615 Open in IMG/M |
Scaffold ID | Ga0314674_10024174 Open in IMG/M |
Source Dataset Name | Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red2_24May_deep (Eukaryote Community Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2144 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Seawater Microbial Communities From Espelandsvegen Fjord, Bergen, Norway |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Norway: Bergen | |||||||
Coordinates | Lat. (o) | 60.2696 | Long. (o) | 5.2187 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001716 | Metatranscriptome | 647 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0314674_100241742 | F001716 | AGAAG | VAKKNSNTAEVSSTNLRAGAAFDNLKASWNQALKLGDFSTKMKANYDYNANRDFIKDVEFTGDLVEGGADDVSVSYKVTHDFGAKNTNVELTANTQGTTLSAEYDQADGIKEVSAERDVSLGDQTVGTTASWLVKAQTARVKLMSKLGDSSDTLSATVDYATEGGAVNYEVGYNRNLEAGRDLEATFKPDSKELDVELVDTKFESGATWTASASVPLESSSNILDAAKLTLKRSWAW |
⦗Top⦘ |