NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314678_10252306

Scaffold Ga0314678_10252306


Overview

Basic Information
Taxon OID3300032666 Open in IMG/M
Scaffold IDGa0314678_10252306 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red3_26May_surf (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)785
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Seawater Microbial Communities From Espelandsvegen Fjord, Bergen, Norway

Source Dataset Sampling Location
Location NameNorway: Bergen
CoordinatesLat. (o)60.2696Long. (o)5.2187Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032919Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0314678_102523061F032919N/AMKPAIILTFLGLFGSLTDACCKHDCNSGNNVNLGLGRMGSEITDDTVEPLAFAVCNTDGVEGLSWAEVEQCEETYCKDLPFNCPPKANFDYFDTDGNGILIWAEWKSLHG
Ga0314678_102523062F032919N/AMKTAIILTFLGLFGSLTDACCQSNCNNDNTVGVSGIPAGRMGSEITDDTVEPLAYAVCNTDGVEGLSWAEVEQCEEAYCKDLPFDCPTKANFDYFDADGNGILTWAEWKSL
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