NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316230_1105028

Scaffold Ga0316230_1105028


Overview

Basic Information
Taxon OID3300032668 Open in IMG/M
Scaffold IDGa0316230_1105028 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18025
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1113
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004924Metagenome / Metatranscriptome418Y
F036063Metagenome170Y
F044486Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0316230_11050282F036063AGGAGMRKLSPAHKLQINMLVLKTTQDYIDFSTTQHGVNFPITVDNLQFHTQDIQYNINALAAFNKDNNVQKLHDSIMQQDTFVREYYIEVLQYIESNNLIPSNAFCCV
Ga0316230_11050283F004924AGGAGMKDAILVKLAEVEAMLLTATCDGVQLTELECFNELENAMSTLLQTVDYYVD
Ga0316230_11050285F044486N/AMLNNILKWLGCATVVAGALCTSLRIDPLNIYLLNVGALAYLVWAIRIRETNLVIVNGVLL
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