NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316227_1186515

Scaffold Ga0316227_1186515


Overview

Basic Information
Taxon OID3300032677 Open in IMG/M
Scaffold IDGa0316227_1186515 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18019
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)735
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017785Metagenome238Y
F071232Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0316227_11865151F017785GAGMSTPIAPIQGTNNIRYADFIRVVTPTQTYRFATTQSALTIPSVDSQPFNGLGQLVGIGAVQRDIKSTANQTTITVVGIDTSMLGWVLSQEIKGSQITMWKGFFNPDGTLITTGGNGGLYQYFYGFVNTFQISEQWMEEQRMYVGTITISAANIQMILQNRVAGRYTNDASW
Ga0316227_11865152F071232N/ATIPVHRNLINGPLSSGIHAVIGQYGTTQSMGGNTYIGCTFPVILQMYPNYTLMPITNDSFIKWTGTFKAFESVL
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