NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314693_10524939

Scaffold Ga0314693_10524939


Overview

Basic Information
Taxon OID3300032727 Open in IMG/M
Scaffold IDGa0314693_10524939 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim5_22May_deep (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)645
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Seawater Microbial Communities From Espelandsvegen Fjord, Bergen, Norway

Source Dataset Sampling Location
Location NameNorway: Bergen
CoordinatesLat. (o)60.2696Long. (o)5.2187Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050883Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0314693_105249391F050883N/AMFDTWRAAAEAITAVVPDMSVSICDVGEGSILPAWLTELTGGAEDIAHDTLEWIKASNNIFYAWHYGTLPEAVSNMQAISRAWDVPSFATETGCSQFDAAAAANISHSYWHYSSYCNTGPWFGNRTVPTDTFGACILGWGSGDSSKCASPRHQTLE
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