NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325410_1054214

Scaffold Ga0325410_1054214


Overview

Basic Information
Taxon OID3300032735 Open in IMG/M
Scaffold IDGa0325410_1054214 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2203
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002704Metagenome535Y
F008669Metagenome329Y

Sequences

Protein IDFamilyRBSSequence
Ga0325410_10542141F002704N/AVQNCHNFQSDHWVAIKLVLEFLDAIFHGVDEESILADDEVWSPSLDGRFETAITFDATVGLRSNFYWSFRMPFSMEWMRDRYSVMMRSGRARLDGRFKIAITFDPTIGSR
Ga0325410_10542142F008669GGAGMPFSMARMRNRYSVMIRSGRARLDGRFETAITFDATVGSRSTFYWSFRMPFSMARMRNRYSVMIRSGRRALMDDSKLP
Ga0325410_10542143F008669GGAMEWKRDRYSVMMRSGRARLDGRFKIAISFNPTIGSRLNFYSSFRMPFSMEWMRNRYSMMMRSGQARLDERFKIAITFDPTIGSR
Ga0325410_10542144F008669GGAGMPFSVEWMRNRYSVMMRSGRARLDGRFETAITFDATVGSRSNFYWSFRMPFSMEWMRDRYSVMMRSGRARLDGRFKIAITFDPTFGSR
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