NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325410_1056874

Scaffold Ga0325410_1056874


Overview

Basic Information
Taxon OID3300032735 Open in IMG/M
Scaffold IDGa0325410_1056874 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2044
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010037Metagenome309Y
F012319Metagenome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0325410_10568741F012319N/AVAEAEIFMAQRLLQNQKSLTKTDSLQTHKSSPEHSSAAEAEIFMEQRLLQNQKSLTKTDSLETHKSSPEHSSAAEAEILLA
Ga0325410_10568743F010037N/ALTKLIRCRPTNSHQNTVLRRKLKSSSHIDYCRIRNHXGKLIRSRRTNPHQNTVLWKKLKSSWHKDSCRIRNHXRKLIRCRPTNPHQNTVLPQKLKSSWHKDYCRIRNHXRKLIRXRPTNHHQNTVLWQKLKSSWHKDCCRIRNHXRKLIRSIPTNPHQNTVLRQKLKSSWHKDSCRIRNHXRKLIRCRPINPH
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