NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315741_11756124

Scaffold Ga0315741_11756124


Overview

Basic Information
Taxon OID3300032739 Open in IMG/M
Scaffold IDGa0315741_11756124 Open in IMG/M
Source Dataset NameForest Soil Metatranscriptomics Site 2 LB Combined Assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)549
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameSweden: Dalarna County
CoordinatesLat. (o)60.97Long. (o)15.87Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064332Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0315741_117561241F064332N/AAKLVTSVYKIVNQKVYVGFDLDVEETATQLPNIGVFVKAFRAMAPYDTYPLQLSSLSGLANPASGDHFKVGIMQSYGPSQQGINFLNMMVNNVDSSCSDMSKFWRDPTFEFLPPANKILGVWGELIPSWVLHNPGCTDGSDPLFSWIKKYGVGIGIWQWWSGATTDIANLITQIREN
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