NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315742_11796103

Scaffold Ga0315742_11796103


Overview

Basic Information
Taxon OID3300032756 Open in IMG/M
Scaffold IDGa0315742_11796103 Open in IMG/M
Source Dataset NameForest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)673
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameSweden: Dalarna County
CoordinatesLat. (o)60.97Long. (o)15.87Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083663Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0315742_117961031F083663N/ASDQFIATFGLNVNDSGIKNESSTFYSNWQIKAQLIDYPTQCIAFNDAATKQSCKIWFLPAGAYLQIPDQNICCLWFPGVGAVPPDFLAPFNYSGVIENVPDQFGVLHSCYRWEGDGFAYWTEVKTGFDIQFRDGPGDTFWNFGALTEAPQAPSIFALPAGCGGTCPSSIAQTAGVLEMTYFHSF
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