NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000012

Scaffold Ga0335085_10000012


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000012 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)745943
Total Scaffold Genes620 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)440 (70.97%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022703Metagenome / Metatranscriptome213Y
F029666Metagenome / Metatranscriptome187Y
F065871Metagenome / Metatranscriptome127Y
F079720Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_10000012252F029666AGGAGVSTYSFLDPGASFALPKSFDFDDYIETEREMWAFFPETEGKRVNFCQIGLTAQIFVESQSLGELERDETYFLMPCPDCSLRPVRMRAVRRLTLDEFRMTHITALRLAEKLSGTSRVMDEIHMQILGPEILEG
Ga0335085_10000012278F022703AGGAMALSKSERERLNDGRLKLQSVANSLTQVNPKEVPNLEEIQDCLEDAEKSFDGALRVAEEGEPRK
Ga0335085_10000012456F079720N/ALALRFAVLAAFGFVFEILIVKKVLFTRGEYEICSAVYALKDSILKLRHINVAPLST
Ga0335085_10000012474F065871AGGAGMDVETMMNGNASKIWIGIAVGAAVGIGIALSRKKKTRWDAAREVTRRVADKTPDFAEATREIMDHVRNIYEEGCKVADEAMELWSHGRRLVAH
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