NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000019

Scaffold Ga0335085_10000019


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000019 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)613680
Total Scaffold Genes544 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)396 (72.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002889Metagenome / Metatranscriptome523Y
F032246Metagenome / Metatranscriptome180Y
F066098Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1000001912F066098N/AMQEESPAWAAFVDVLAKTFLTCVPEPLRDVHDQAVPRCKARYDRFLKSVGMAMVGDSQAAMAELLGRGHEN
Ga0335085_10000019216F032246GAGGMERVTIEIDSRWVAIVRSPIYWIVAALQGVSVTFAPLFLYWSGKGMFQHGSERLIVPSCFAVILFVGFFYFLLGAAVIGELRKKHLSA
Ga0335085_10000019493F002889GAGGMFRRHSFCFLVLILFGLGGCSSGPSPTESKSAAKAHDKIQGKVQEMASETTATDVALNAGGPSVYLLAGLHRYRLFFRKAVEIDPTKEYEVEGVYAQKEIDAIGDPDQGKNGYPLPGSCERVVKMAWPGLAMDVTDLHSQVLCARIKRYPARPVFLVTRLTPATAKEKGEPGIGAGVEGEDIPEVTVPADKQRALLIAGSAVQTAPLWAPEAATVRCKLLIDKDGKIAELETGVQLCESVPWTDFRYKPTLKGGHPVRVETEVEVRFEARK
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