NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000127

Scaffold Ga0335085_10000127


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000127 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)243163
Total Scaffold Genes214 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)157 (73.36%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000378Metagenome / Metatranscriptome1211Y
F000530Metagenome / Metatranscriptome1047Y
F002358Metagenome / Metatranscriptome567Y
F005269Metagenome / Metatranscriptome406Y
F007541Metagenome / Metatranscriptome349Y
F021165Metagenome / Metatranscriptome220Y
F036824Metagenome / Metatranscriptome169Y
F052160Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_10000127110F000378GGAGGMEDRAPAVSPTEQSSTTTASIKHEGRGAWVLTAYGLSGLALFGVLAYFFSDFISH
Ga0335085_10000127138F000530GGAMEDEFESSARLLPAPPEKHAPAVATERPFRVKLRGSVLVLVRLPNKRAVRAAIHQLSTSGGVIHLEKPLDEKLEVEMIFHISKATIRSKAQMLFPMWATQGWMQPFRFVDLPEKSRDILDAKLKTFLGEAANGAAAGA
Ga0335085_10000127199F007541AGGAGGMRNQRSRLMLCLFVVGLCSMFALAQDDTSNASKGQVRNLTGCLTKSGGGDEYLLTANDGSTWEIHENNAVDLASHVNQTVKLRGVVSHEKTHNMKEDAKDMASDAGATKPKAEHGHLKATDIKKVGDSCQWH
Ga0335085_1000012730F036824GAGMARDILVKGSARDDSELFEFTIEHFVSGGFMLSIKYSGDCHHNITGAGVWPTVDKAKEIAAETAKRLLHGATVTWEDRGNKTCD
Ga0335085_1000012763F002358AGGMPVTVTGAKAPENTGREQAEASDKVSALAEVLRKYSYVEIRQRMYDSPPGSPWWTACRAELDLRNGQQFGEAALAISRTSDKMRASLQHFEQLADTLQQATKDVADLLRGTQEAGRRLEIAVYVTIGITLVQFFNLIFEIFRKHR
Ga0335085_100001278F005269GGALTRDELSASYAIIRHNVRTYRSAGVVEVVKGKQLAESTLEKLEACQDSSDHYEGWRYFIERTDQKPGIDPIEATQRRQEELEMRESKAMRETKPSVIPPDIQG
Ga0335085_1000012792F052160GGAMGRSDILDSQIEDETLQSWLQEKLQHATSLLSGNGKVNVERVDPLRVDVDLNFTVQGQSVADIMERFRDDFRALGPITQGIEIGETKNYKLCFPRINGEQFPVFVRIDPDTGHPIYTED
Ga0335085_1000012793F021165GGAGLDFQVNNETYFIDLADEEGKWLVFAQTPTGVRRIPVYVDAPIAEEDLPVLVEDNKRRKIV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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