NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000186

Scaffold Ga0335085_10000186


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000186 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)194184
Total Scaffold Genes157 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)136 (86.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000742Metagenome / Metatranscriptome912Y
F004311Metagenome / Metatranscriptome444Y
F028953Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_10000186123F028953GGAGGMSLIFAFVRKWVAWYCVLRYGKTFGFGDSIRYGLWLARG
Ga0335085_10000186126F004311AGGAGGMLRVEIQDSANSLILTLEGRFTDGAAENTRTLTTRCREGMRLVVDLTEVTFVDSVGEQVLSFFGRFGAEFVAQTSYALDLCERLDLRLARAGAPNANNSSLDRVNARRRKPR
Ga0335085_100001867F000742GGGGGMRRGKNILERTRAQRALAVFACAVLLYFATGGSLLHQHTGGNETPCHICQSLHVPVLAAAPLDLVSAPGLFARFASLPQHISPSNSFSLHRASRAPPTA
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