NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000283

Scaffold Ga0335085_10000283


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000283 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)153767
Total Scaffold Genes139 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)108 (77.70%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000969Metagenome / Metatranscriptome818Y
F003774Metagenome / Metatranscriptome469Y
F003854Metagenome / Metatranscriptome465Y
F048517Metagenome / Metatranscriptome148Y
F076297Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0335085_100002831F076297AGCAGGMARGRARYQRGRVVATEAGGWEIHYNVYLSDPTTGKAKRHHRSRVVGYRPKMHRADAEKILAAELAAINGGPVTRAADGTITFGDWMRNFYIPMRGANWRDATRRTNLDYLTSHVYPT
Ga0335085_1000028331F000969GAGGMINDDVVKCPLCGGFTHIEKTDLLAALKEPRIREQIEKYVGELLKSPVDELSSVSATQSGRDFQKDVHSWNPCVPMWRRSPKE
Ga0335085_1000028335F003774AGAAGGVVDNHKLVGIVQRLSLTGGSALLAKGPIAQGTLGEIAFGTVFGKVQAHIEFLHTGADGVPLAQAFSFLTMDDMSSQRFKSALAEMHASDLSDLVQTRTAIDKAFETLRESIRQLSGMLNSGQRRRSRS
Ga0335085_1000028366F048517GGAGMITIRKFAYAAVLAVSALTLASNAAVAEAPAHGKFTLAHDVRWGNALVPAGDYEFSYDPYVKSPILTLTKVSGTRASYMLLVLSAEDSKATNSNRLVLETVADGNYVSTMELAECGMTLYFTVPSHPAKQMAKTATTVASSGQ
Ga0335085_1000028369F003854AGGAGGMLATRHRLPRNPLFQFHPMHTLFSLVGALILFGLLVWFLAVPAK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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