NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000386

Scaffold Ga0335085_10000386


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000386 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)127811
Total Scaffold Genes109 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)77 (70.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000378Metagenome / Metatranscriptome1211Y
F000530Metagenome / Metatranscriptome1047Y
F003137Metagenome / Metatranscriptome505Y
F003774Metagenome / Metatranscriptome469Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1000038620F003137N/AMPKKRKPKPFRAVTAVKELARERVGQPPTEKIVVEKKRKPERHKVNLAKLLDEAD
Ga0335085_1000038646F000378GGAGGMEDRAPVVSPTEQSSTTTTSIKQREGRGAWVLTAYGISGLALFGVLAYFFSDFIAH
Ga0335085_1000038679F000530N/AMEDEYGSSARLLPSAESKPAESKTITSKQIERPFRVKLRGSVLVLVRLPNKRSLRAALHQLSISGGVIHLEKPLDEKLEVELIFHLEKATIRSKAQMLFPMWATQGWMQPFRFVDLAGENREILDAKLRTFIGEAKAASAGA
Ga0335085_1000038685F003774AGGAGMQAFRQGSPERSFELVCSEPRPKNTFVTLTSLTLFVIVPTMARNVQRSNKYRPPRIRVPHQQKAIFTADNQKLLGVVQRLSLTGGSALLTKGPIPEGTLGEMLFGTVFGKVNAHIEFLHRNADGVPLSQAFTFLTMDAISSQRLKKALEEMNTSEFSDDAPKRNRSDVAFETLRQSVRQLSGFLNSVRPTRPKG
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