Scaffold Ga0335085_10000674

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335085_10000674

Scaffold Ga0335085_10000674

Overview

Basic Information
Taxon OID	3300032770 Open in IMG/M
Scaffold ID	Ga0335085_10000674 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	89898
Total Scaffold Genes	82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	59 (71.95%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005124	Metagenome / Metatranscriptome	411	Y
F010059	Metagenome / Metatranscriptome	309	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000067470	F005124	N/A	VVLRTCTVAVKDVQDIEHSVEVTAETLYEAIATALAALQKDVWVGEIGQGFTAVTVVVHQPPVKHEVKMKDFVSWLGRQGRSPAEVTLKQKPERILGKGSQVRT
Ga0335085_1000067473	F010059	GGAG	MVPSLADAVTIFSKWKEDSAEVLVVSESPFQQSRRGVIQQSVDWSLGMQGKITEATIDASIKGSKSARVVLATTSGNLSLNIGICVFVYEEPREAKPDVRAEAESATISALSVFFPSNEVFVFYELREPIQKGSLFGWSTI

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