NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000840

Scaffold Ga0335085_10000840


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000840 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)76407
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (79.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013143Metagenome / Metatranscriptome274Y
F020395Metagenome / Metatranscriptome224Y
F039518Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1000084035F039518AGGAGGMRRRSIVALLVIAGWLTIVPLSVRAQSMDLKTAPPAKDRVAPSVPERDLYPQRPSLPDRPSFVAPLSKDTRTGRAGVAGFSAPNPPVGSRVAGDRENPGWPSVGFSIEWGRPPRAN
Ga0335085_100008404F020395AGAAGGMNPEDELRTLELMLSEYRETLKEVNRLGGDGMAAVRGEWLLRIKELELQREHLSHVVRKRRRHVG
Ga0335085_1000084073F013143AGGAGMLSRFVLGAIVGGIAEYVWGEEIRQFMSTKGRTARLAAADTLQAVQSTAEQIIDSARDQVTSTLEAGQEVIRPSRNRR
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