NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10001298

Scaffold Ga0335085_10001298


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10001298 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55065
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (89.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002288Metagenome / Metatranscriptome574Y
F002929Metagenome / Metatranscriptome520Y
F003851Metagenome / Metatranscriptome465Y
F026325Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1000129839F002288N/AMGESDRTRKRQVFCWPKAARELVRNYQENIGRGSEHNKSDKEAVLATLAELSGNPRDACLRFLRHLGVVHKRTYREWTKPEQQRLLDLITSIPVEEAANILHRSPGSVRSMLHRLGMGGRTGREWFTKFSLSRALHTRPDEVQKWIDAGWLRSRTLTTAGAHARIIYADDFCEFVKQHGRDVVGRRLTYDALWFVRNYVFPPSHAELLSVRGTYKKHDAGDETGANTDSPSACGSEEGA
Ga0335085_1000129842F002929AGAAGGMSQSFRPVKEIWNTHTSCFVEPEELIALFHDLAARVGTASDEHEYGDNKTVWLEDGNKVLDYIEADKRFDAASFKDSLEEQGVVTDQNDLTTLTANMRSLAKQWRSSIGERGELVFYIDA
Ga0335085_1000129846F003851GAGGMKQRKLAGASSRTNDENAERVLRALQEARHGRVNTNDPIVEQLRQCPEAFKVGEILGKAFDSLKYAQDGGELGDRYLPPAGTVLPPLV
Ga0335085_1000129847F026325GGAGGMTDPASAIKREVHQLVDLQIETLRQPSRLTASDLSDYRVRSEKITTLFHELDQLRRAHFERPLRRAS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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