NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10001533

Scaffold Ga0335085_10001533


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10001533 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47953
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (76.60%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025129Metagenome / Metatranscriptome203Y
F031632Metagenome / Metatranscriptome182Y
F039837Metagenome / Metatranscriptome163Y
F049268Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1000153328F031632AGGMDHFRTHLCAICGEERFANQPRFLVTENTWEDKLTILQWNERVGIQVARGIDHVEELVIHWMTTGSLDHPYARTALGSTRWRRSITPSGRADLSGARPIGELAVHRESIERVLAENPQSLRAVLDALLDALCRETKIEEEPVPRRESEPESERKEALCAVSTEPEY
Ga0335085_1000153329F025129GGAGGMELVFTTVAVIGGMTFSLAVAILVEELIFGKVLCLFFNPRTPQPKAAVQR
Ga0335085_1000153341F049268AGGAGMEIIRHLSHDELTDPVIESDQQALRSTLEALPEWARASTGQPEEFWRRQRDVIWSRISSLERHPRNRAVRRPLLLAWSVMAAMVLLAGLMLDRASYAPPPKAQIDPDHELLMAVERAVHSDGPAALDPAALLAEEMVQDLPAAHSPIRKKEPTHEN
Ga0335085_1000153347F039837N/ADLSFSADATSLLSDAYAPQDLPAAELAKLDGPATITGDTLQVSVHNGTTWNIREITVGLTILRSPEANSARRGSARLMPAAETTTLLSEKHPDSTVLYQLKGSAAPSSTTVFHGSLGVAPGQDQEWHWAIVQAKGVPSPKPQTPDPTQ
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