Scaffold Ga0335085

Basic Information
Taxon OID	3300032770 Open in IMG/M
Scaffold ID	Ga0335085_10006156 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032770 Open in IMG/M

Scaffold ID

Ga0335085_10006156 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19033
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (32.00%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (46.15%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

19033

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (32.00%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (46.15%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5052

Long. (^o)

-80.2345

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F035367	Metagenome	172	Y
F037652	Metagenome / Metatranscriptome	167	N
F038201	Metagenome / Metatranscriptome	166	N
F045053	Metagenome / Metatranscriptome	153	N
F045645	Metagenome	152	N
F046997	Metagenome	150	N
F050262	Metagenome / Metatranscriptome	145	N
F051827	Metagenome	143	N
F055381	Metagenome	138	N
F058854	Metagenome	134	N
F063304	Metagenome	129	N
F064316	Metagenome	128	N
F078490	Metagenome	116	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000615610	F046997	GGA	MTSAYPTLSLIGCSLTLSAVAAAGPLTAADVRAERDCIPRYLAQEKAEAIEMFAASQQALLRDRAMSGISRIENKLQSGPTNAVVEPTARLLPLGEKKLTLHVDVLKKTYTAYRPSNGKPLYLNTKGRRAPETYVAPEFLRVGVNILIPKGTARVPACLGGEELEDYLQLRCDRKLQTGDYWKELHARKLDDEQLARLRYYDYLDTHAALRSVPVYQCTELRSRTH
Ga0335085_1000615612	F035367	GGA	MPAAVRWIFILALDAALCGFFGLSIALLHFLWLEYATVRWPRIRYTEDYQTSFALVCAAVIFVLTALRQIKTRLECKSLRAGEMGLILVFALIAMVGMTPVPGSNFPRYLYEMNRSAKPDEGQSSAGKDEGVNPFKLKREAP
Ga0335085_1000615613	F063304	AGG	MEDMKLSNPAINGNSSPHVYNLLDQRLAQQGTPLHQIIRTYAAAVPAPPTSPEELLNQVTAVLGKWSADPAQCVKLETPLAEAHLQLMDEISKIQGPEGAARLEATLVRVVANQFARNMGSELRIPDESKLICLSDVRPANAYSAFAQRTALIGIQPHEWVRHWVDSQRELFRAKAPTDAGYLRLAQRLSGPWPAEPGKGDAFQKTLATFLDGIASSTSHGQAVVVQSSLLDTFARAIRRDVRDLGLDRPTAPSPAMSIG
Ga0335085_1000615615	F045645	N/A	MERNPHRRGIENVKLQEATLKALKSVTGVYAVRPIIRNKALILRPGRDGHELAQDEGEAMRVVAVSDLKPSLLSFAAINGIRVKNYTDMAAPKPRMPSAPKSAQAPDLVM
Ga0335085_1000615616	F038201	N/A	MAVNPAQADVFTRNVEFMVAQVAGKHAARTFRMLQTAFPGLRNFQQLRAFATLYVAYGLKPLRLHPLPSDIDPGRLKGELSLRFYKGMVVLAPDERIVWRGADAYGPFDASRASRFSRQLSAESPTNDEKGHVLDPETCAPVPVGQCPFELS
Ga0335085_1000615618	F051827	GAGG	VKSQIYLVQNYSGVSLEVVGGPFDPNAVEEIEGAIIQLVKEDSGLGRGGDDSLHTLEIGSEGKPEFGGFSGGYLENIRWVAAGCPPSEKPDAWDHPEFALAAREQAREPQSVTTPGEEK
Ga0335085_1000615619	F078490	AGG	MACRKQKLTHVDVEKCEFNGQQLRFVTGRTRGKAPNRELARLTFLPLRSGTYKRRIPGVILRLLNP
Ga0335085_100061562	F037652	N/A	MERIPYTNFWSETPEGQRRAWRPTDEVRRRLMRLWTIQALLLTAIVAIGALLAKESKRMPPIFAELPNGMVFETAIGKLQMDRLARTELVNDVLPLLYYQEGSFNYLGAIRQNVKPQLLGRFQAEMQNASKQTNSTVCLNVVETFEVVNVPAKGFDAVTKGVLSKCSNKDSVSAPIYIRTRWLLSGDRYLLSRVEEIRPGDYYELFLAEKEKLKKLSKQELERELGVRKNHEIPLPKRNNLL
Ga0335085_1000615624	F045053	N/A	MPLDLHMITVATYTVPGFGEVSVVRQNDAGNPCWDLFAASGEWLNEGHPFRYKPRRAQVEAFLAERLKEVLARVSKECRRLKIRQVDLDELVDEAAQANNPELNEAPGEKQQERLISSAEERACRVNNQGRADQLVFLLEAYGEAGVMTALRNL
Ga0335085_100061563	F064316	N/A	MLGNSPEEARLEVADPTAVKPAKKVGALKLLLRQFEATGNPPLQGEEVLPPKLVGDGNYHWYPLAWLRWLAQWERVKTGILLLILLCLVAVYAVISHRQSCQVNLPEPSSELLLKAKGFDTFNQNQAEAFVLFVLNAANQSSSEGTPNLSLLEGSIDAAIYLRLQQKGTSQQLKNTQPADFPIYTLYISEVTRWRYNPATRIVSAYARGFRMSHTLSGKSGMEPYRAQVEIFWEPMSNRNKWGYYVQRLDEFYGAAAQACDAELKNRDRTGT
Ga0335085_100061566	F050262	N/A	MVAAIIILGLVVTGVAQFLLVSKINVYTDNVKAGVVQALSDTIVKYQAMGVGETNVPVREDLLPHIPSGTIRLEKAGPANGVYTVQGSVTWRAFPYGDESFLFHEQLSLEVPE
Ga0335085_100061568	F055381	N/A	MRTLFTTLFLLAALAASGASIRNVYLPPWYDRAAFQRVELELKDLPAAFVQLDLPCSVSCTNQIIVVNQGNAHTTLSIDLKRTPATFPIVVLAPGTNGRMTPHQKLICHLSLVPMPFTVEVRGDTFSVTNLTEEPFVLEYARNLTITSQDDRHIVGTLHGNGSTKLKGRAEIRLNPKPRS
Ga0335085_100061569	F058854	GGA	MRLCVLCLFTSALNSEAELIDHFNARWQGCAWQANRLDLPGLAWQSALFPLITQGPGAFSLPSGAFVLRLCVLPLNPEDSEPILVLWGRIADPKAKPLARLFLRKRRLVWVCPIDPKGDSLFDAPRDVELETRELTPGLWATVDVLVNPSPYQQAFGWNLEMNHPQDPSKPMGKPLHLARQLTAADWSLQKIEVPRQHSVWLGQMELLAAGTPPAQLRPNILRR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335085_10006156

Overview

Ecosystem & Geography

Associated Families

Sequences