NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10041970

Scaffold Ga0335085_10041970


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10041970 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6265
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F006278Metagenome / Metatranscriptome377Y
F006399Metagenome / Metatranscriptome374Y
F017965Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_100419701F017965N/ARIAMTDMSETIGDPDALYLFACHLEWRTKRNLAAYQELLAALDDHDGDIRHLAESLLHRSSPRPERTATGVESW
Ga0335085_100419702F006399GGAMATSALNSRVQSLVTEYGVFWQFWPQFEQTHGERRLVGFEVELIGSHRSDLNHVDPACPSCRHVRSVLLVIAELMPGELSLSRHSLTFNIDSHSSSIVCLSALGNRSAVWVSIYVFLNRANGQSFETDLLNEVKTLLNRWGIHQR
Ga0335085_100419704F006278GAGGMFRAEIQRLASGPTLKLKGELVADWAEQARCLVTTDVLPKGLTIDLTEVSYIDSVGAQLLKWLASVGAVFVAGNVYANALCDGLGLSPIQKIAGRRERRHGNNDEVLNWAFPSR
Ga0335085_100419705F001596AGGAGMSWFHSSTAAVDARNYSSPAEIVTCFRSQRNVLGRLAFLISGHQRTADQAVVQACEMTLQGNSPFRNWLFEWAKAATIASAISHGTEAIRICEAAYKDRRCKHVEHLSQGDAEERAPGLDLILGTDAQTLIAELDPLCRAVLVLRAAIRSSIQDCALRLNVSRAAGLAANCHVLTWLPERHVKPVEKNGDASHAV
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Institute for Fundamental Biomedical Research
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