Scaffold Ga0335085_10054492

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335085_10054492

Scaffold Ga0335085_10054492

Overview

Basic Information
Taxon OID	3300032770 Open in IMG/M
Scaffold ID	Ga0335085_10054492 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5381
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008041	Metagenome / Metatranscriptome	340	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_100544926	F008041	N/A	MPDRLFLSEEFGTSSPTTATIIFVCPYSTPIQKVRFAIERFLRTGHHVVAYQTTAAVFTEGDPRILPELISQVRDDIRSLIARLASQGVTKFGFFGSSLGSFILYNCIGREIPELRWGVFNTGGNIARGVWNMPMLRQQHAERGWSLPQLEEAWAKLQWPDFGRLDGCRFVFASSRRDKVAPLSNISQYVEPMLRAGAEVSVYEVPAISHRTAVIAGLWKGPQLVRRVRSEGPGARITRHRSHSANDRGSR

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